Computational Methods in Systems Biology: International Conference CMSB 2007, Edinburgh, Scotland, September 20-21, 2007, Proceedings

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Muffy Calder, Stephen Gilmore
Springer, 04.09.2007 - 249 Seiten
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This book constitutes the refereed proceedings of the International Conference on Computational Methods in Systems Biology, CMSB 2007, held in Edinburgh, Scotland, September 2007. The 16 revised full papers presented present a variety of techniques from computer science, such as language design, concurrency theory, software engineering, and formal methods, for biologists, physicists, and mathematicians interested in the systems-level understanding of cellular processes.

 

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Inhalt

Chemical Master Equation and Langevin Regimes for a Gene Transcription Model
1
Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models
15
Modelling Yeast Prer_RNA Processing
32
On the Analysis of Numerical Data Time Series in Temporal Logic
48
Context Sensitivity in Logical Modeling with Time Delays
64
Stochastic Simulation of Biological Systems with Dynamical Compartment Structure
80
Computational Simulation of Optical Tracking of Cell Populations Using Quantum Dot Fluorophores
96
A Formal and Integrated Framework to Simulate Evolution of Biological Pathways
106
An Automated Translation from a Narrative Language for Biological Modelling into Process Algebra
136
Expressive Models for Synaptic Plasticity
152
Modelization and Simulation of Nano Devices in nanoκ Calculus
168
Efficient Correct Simulation of Biological Processes in the Stochastic Picalculus
184
A Unifying Framework for Modelling and Analysing Biochemical Pathways Using Petri Nets
200
Reconstructing Metabolic Pathways by Bidirectional Chemical Search
217
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks
233
Author Index
248

Reconstruction of Mammalian Cell Cycle Regulatory Network from Microarray Data Using Stochastic Logical Networks
121

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Seite 231 - Palsson. 2000. The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. USA 97:55285533.

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