Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite Workshops on Systems Biology, and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected PapersTrey Ideker, Vineet Bafna Springer, 19.09.2007 - 134 Seiten This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2006 satellite events: the Second Annual Workshop on Systems Biology, RSB 2006, and the First Biennial Workshop on Computational Proteomics, RCP 2006, held in San Diego, CA, USA in December 2006. The papers cover various aspects of systems biology and explore the use of computational mass spectrometry in various proteomic applications. |
Inhalt
| 1 | |
Probabilistic Paths for Protein Complex Inference | 14 |
Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting | 29 |
A ContextSpecific Network of ProteinDNA and ProteinProtein Interactions Reveals New Regulatory Motifs in Human B Cells | 42 |
Identification and Evaluation of Functional Modules in Gene Coexpression Networks | 57 |
A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion I... | 77 |
A Computational Approach for the Identification of SiteSpecific Protein Glycosylations Through IonTrap Mass Spectrometry | 96 |
De Novo Signaling Pathway Predictions Based on ProteinProtein Interaction Targeted Therapy and Protein Microarray Analysis | 108 |
Alignment of Mass Spectrometry Data by Clique Finding and Optimization | 119 |
| 130 | |
Andere Ausgaben - Alle anzeigen
Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite ... Trey Ideker,Vineet Bafna Eingeschränkte Leseprobe - 2007 |
Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite ... Trey Ideker,Vineet Bafna Keine Leseprobe verfügbar - 2009 |
Häufige Begriffe und Wortgruppen
analysis annotations ARACNE Bafna BESTPATH Bioinformatics Biol biological c-Src cells cleavage schemes clustering algorithms clustering coefficients clustering results CoE networks computed connected corresponding database defined degree distribution discrete dynamic system duplication model dynamic system model edge weights equations evaluate experimental experiments expression profiles false-positive fragment function gene expression Gene Ontology genetic GeneWays genome glycan glycopeptide glycoproteins glycosylation GO terms graphlet Ideker identified inhibitor k-hop reachability linear Markov Additive mass spectrometry matrix maximal cliques MEK1 method microarray modular motifs MS/MS spectrum number of clusters Observed and Fitted P-P interactions p-value pairs parameters path pathways peptide glycoforms PPI networks predicted probabilistic probability protein complexes protein-protein interaction Proteomics Qcut random weighted strings reference network regulation regulatory sample score seed graph sequence signaling network SIMULATED spectra statistical structures Systems Biology target topological transcription factors weighted strings YAP1 yeast