Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite Workshops on Systems Biology, and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Revised Selected PapersTrey Ideker, Vineet Bafna Springer Science & Business Media, 20.07.2007 - 134 Seiten This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2006 satellite events: the Second Annual Workshop on Systems Biology, RSB 2006, and the First Biennial Workshop on Computational Proteomics, RCP 2006, held in San Diego, CA, USA in December 2006. The papers cover various aspects of systems biology and explore the use of computational mass spectrometry in various proteomic applications. |
Inhalt
The Role of the Seed Graph in PPI Network Emulation | 1 |
Probabilistic Paths for Protein Complex Inference | 14 |
Markov Additive Chains and Applications to Fragment Statistics for Peptide Mass Fingerprinting | 29 |
A ContextSpecific Network of ProteinDNA and ProteinProtein Interactions Reveals New Regulatory Motifs in Human B Cells | 42 |
Identification and Evaluation of Functional Modules in Gene Coexpression Networks | 57 |
A Linear Discrete Dynamic System Model for Temporal Gene Interaction and Regulatory Network Influence in Response to Bioethanol Conversion I... | 77 |
A Computational Approach for the Identification of SiteSpecific Protein Glycosylations Through IonTrap Mass Spectrometry | 96 |
De Novo Signaling Pathway Predictions Based on ProteinProtein Interaction Targeted Therapy and Protein Microarray Analysis | 108 |
Alignment of Mass Spectrometry Data by Clique Finding and Optimization | 119 |
130 | |
Andere Ausgaben - Alle anzeigen
Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite ... Trey Ideker,Vineet Bafna Eingeschränkte Leseprobe - 2007 |
Systems Biology and Computational Proteomics: Joint RECOMB 2006 Satellite ... Trey Ideker,Vineet Bafna Keine Leseprobe verfügbar - 2009 |
Häufige Begriffe und Wortgruppen
120 time Observed 120 time SIMULATED Acids Res analysis annotations ARACNE Bafna BESTPATH Bioinformatics Biol biological c-Src cells cleavage schemes clustering coefficients clustering results CoE networks computational connected database defined degree distribution discrete dynamic system duplication model dynamic system model edge weights equations evaluate experimental experiments expression profiles false-positive fragment function gene expression Gene Ontology genetic genome glycan glycopeptide glycoproteins glycosylation GO terms graphlet Ideker identified inhibitor k-hop reachability linear mass spectrometry matrix maximal cliques MEK1 method microarray modularity motifs number of clusters Observed and Fitted P-P interactions p-value pairs parameters paths pathways PPI networks Predicted Relative Abundance probabilistic probability protein complexes protein interaction network protein-protein interaction Proteomics Qcut reachability 15 20 reference network regulation regulatory Relative Abundance 1.0 sample score seed graph sequence signaling network spectra statistical Systems Biology target topological transcription factors weighted strings YAP1 yeast