Systems Biology and Regulatory Genomics: Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005, Revised Selected Papers

Cover
Eleazar Eskin, Trey Ideker, Ben Raphael, Christopher Workman
Springer Science & Business Media, 18.01.2007 - 261 Seiten

This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2005 satellite events: the First Annual Workshop on Systems Biology, RSB 2005 and the Second Annual Workshop on Regulatory Genomics, RRG 2005, held in San Diego, CA, USA in December 2005. It contains 21 revised full papers that address a broad variety of topics in systems biology and regulatory genomics.

 

Inhalt

Title
1
A Tool for Analysis of SignalTransduction Pathways
11
A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations
23
Comparison of ProteinProtein Interaction Confidence Assignment Schemes
39
Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs
51
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes
62
Improvement of Computing Timesin Boolean Networks Using Chisquare Tests
70
Build a Dictionary Learn a Grammar Decipher Stegoscripts and Discover Genomic Regulatory Elements
80
Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data
150
Topological Robustness of the ProteinProtein Interaction Networks
166
Application to Saccharomyces Cerevisiae Cell Cycle Data
178
Probabilistic in Silico Prediction of ProteinPeptide Interactions
188
Improved PatternDriven Algorithms for Motif Finding in DNA Sequences
198
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties
212
An InteractionDependent Model for Transcription Factor Binding
225
Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C elegans H sapiens and A thaliana
235

Causal Inference of RegulatorTarget Pairs by Gene Mapping of Expression Phenotypes
95
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
107
Improved Duplication Models for Proteome Network Evolution
119
Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis
138
Evaluation of the Reaction Mechanism
249
Author Index
258
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