Systems Biology and Regulatory Genomics: Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA, December 2-4, 2005, Revised Selected PapersEleazar Eskin, Trey Ideker, Ben Raphael, Christopher Workman Springer Science & Business Media, 18.01.2007 - 261 Seiten This book constitutes the thoroughly refereed post-proceedings of two joint RECOMB 2005 satellite events: the First Annual Workshop on Systems Biology, RSB 2005 and the Second Annual Workshop on Regulatory Genomics, RRG 2005, held in San Diego, CA, USA in December 2005. It contains 21 revised full papers that address a broad variety of topics in systems biology and regulatory genomics. |
Inhalt
Title | 1 |
A Tool for Analysis of SignalTransduction Pathways | 11 |
A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations | 23 |
Comparison of ProteinProtein Interaction Confidence Assignment Schemes | 39 |
Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs | 51 |
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes | 62 |
Improvement of Computing Timesin Boolean Networks Using Chisquare Tests | 70 |
Build a Dictionary Learn a Grammar Decipher Stegoscripts and Discover Genomic Regulatory Elements | 80 |
Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data | 150 |
Topological Robustness of the ProteinProtein Interaction Networks | 166 |
Application to Saccharomyces Cerevisiae Cell Cycle Data | 178 |
Probabilistic in Silico Prediction of ProteinPeptide Interactions | 188 |
Improved PatternDriven Algorithms for Motif Finding in DNA Sequences | 198 |
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties | 212 |
An InteractionDependent Model for Transcription Factor Binding | 225 |
Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C elegans H sapiens and A thaliana | 235 |
Causal Inference of RegulatorTarget Pairs by Gene Mapping of Expression Phenotypes | 95 |
Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels | 107 |
Improved Duplication Models for Proteome Network Evolution | 119 |
Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis | 138 |
Evaluation of the Reaction Mechanism | 249 |
258 | |
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Systems Biology and Regulatory Genomics: Joint Annual RECOMB 2005 Satellite ... Eleazar Eskin,Trey Ideker,Ben Raphael,Christopher Workman Eingeschränkte Leseprobe - 2007 |
Häufige Begriffe und Wortgruppen
aeruginosa algorithm analysis approach Bacillus subtilis Bioinformatics Biol biological Boolean network Ca2+ cell cycle clique tree cluster codon coli computational conserved core promoters correlation database dataset degree distribution Discrim discriminative model duplication model EC score edge elegans Eskin experimental expression profiles false positive functional groups gene expression gene regulation gene regulatory network genetic genome-wide genotype graph identify intergenic k-mers length location data maximal cliques method microarray microRNA miRNA genes modules motif mRNA nodes Nucleic Acids Res nucleotide p-value pairs paraclique parameters perturbations Petri net Petri nets phenotypes pol-II promoters predicted probability promoter regions promoter sequences protein interaction network protein-protein interactions proteome random reaction Regulatory Genomics represent Saccharomyces cerevisiae samples scheme sequence similarity SH3 domain SIDD species sporulation stegoscript target genes TFBMs thaliana threshold total number transcription factor transcription factor binding Tree of Complexes upstream values WordSpy yeast proteome network